@darkuncle @aral Absolutely. I think the solution for such an issue would be to properly communicate what an option means so that the user can make a proper decision.
One possible tactic that comes to mind is if a user opts to not enable notifications from the prompt, display a second prompt along the lines of "Are you sure? You won't get notified and will have to open the app to check messages. You can change this option in this menu later." and lock the confirmation and cancellation options behind a 3-5 second timer so that the user is more likely to actually read the warning and not thoughtlessly tap the confirm option just to get rid of it. I don't have years of experience designing and testing UX though so there's probably better ways to accomplish the goal.
